scipy.spatial – Spatial data structures and algorithms
In this article, we are going to see spatial data structure and algorithms, it is used to represent data in a geometric space.
What is spatial data structure?
The spatial package computes the triangulations, Voronoi diagrams, and convex hulls of a set of points, by leveraging the Qhull library. Moreover, it contains KDTree implementations for nearest neighbor point queries and utilities for distance computations in various metrics.
Example 1: Delaunay Triangulations
In mathematics and computational geometry, a Delaunay triangulation for a given set p of discrete points, in a plane is a triangulation DT(p) such that no point p is inside the circumcircle of any triangle in DT(p).
Python
from scipy.spatial import Delaunay import numpy as np import matplotlib.pyplot as plt points = np.array([[1, 4], [2, 1], [3, 0], [0, 2], [4, 3]]) tri = Delaunay(points) plt.triplot(points[:, 0], points[:, 1], tri.simplices.copy()) plt.plot(points[:, 0], points[:, 1], 'o') plt.show() |
Output:
Example 2: Coplanar points
Coplanar points are three or more points that lie in the same plane. Recall that, a plane is a flat surface, which extends without end in all directions.
Python
from scipy.spatial import Delaunay import numpy as np points = np.array([[0, 0], [0, 1], [1, 0], [1, 1], [1, 1]]) tri = Delaunay(points) print(tri.simplices) print(tri.coplanar) |
Output:
[[3 1 0] [2 3 0]] [[4 0 3]]
Example 3: Convex Hulls
The convex hull or convex envelope of a set of points X in the euclidean space(or, more generally in affine space over the reals) is the smallest convex set that contains X.
Python
from scipy.spatial import ConvexHull import numpy as np import matplotlib.pyplot as plt points = np.random.rand(10, 2) hull = ConvexHull(points) plt.plot(points[:, 0], points[:, 1], 'o') for simplex in hull.simplices: plt.plot(points[simplex, 0], points[simplex, 1], 'k-') plt.show() |
Output:
Example 4: KPTrees
kd-tree is a quick nearest-neighbor lookup. And Kdtree() methods return the kd-tree object
Python3
from scipy.spatial import KDTree points = np.random.rand(10, 2) kdtree = KDTree(points) result = kdtree.query((1, 1)) print(result) |
Output:
(0.5144859720297681, 9)
